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LOVD - Variant listings for PMS2

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Patient data (#0000306)
Disease -
Reference -
Remarks -

Variant data
Allele Unknown
Reported pathogenicity Unknown
Concluded pathogenicity Probably pathogenic
Exon 2
DNA change c.137G>T   (View in UCSC Genome Browser)
RNA change r.(?)
Protein p.(Ser46Ile)
MAPP/PP2 Prior P 0.939
Prior P 0.900
IARC Classification Class 3: Uncertain
InSiGHT Classification Class 4: Likely pathogenic
Tumour Char LR 0.100
Segregation LR 6.221
Odds for causality 0.622
Posterior P 0.8485
Reference Thompson et al., 2014, InSiGHT
Variant remarks -
Template DNA
Technique SEQ
DB-ID PMS2_00002

1 entry in PMS2

Path.
Allele Descending
Ascending
Exon Descending
Ascending
DNA change Descending
Ascending
RNA change Descending
Ascending
Protein Descending
Ascending
MAPP/PP2 Prior P Descending
Ascending
Prior P Descending
Ascending
IARC Classification Descending
Ascending
InSiGHT Classification Descending
Ascending
Tumour Char LR Descending
Ascending
Segregation LR Descending
Ascending
Odds for causality Descending
Ascending
Posterior P Descending
Ascending
Reference Descending
Ascending
Variant remarks Descending
Ascending
Template Descending
Ascending
Technique Descending
Ascending
DB-ID Descending
Ascending
?/+? Unknown 2 c.137G>T r.(?) p.(Ser46Ile) 0.939 0.900 Class 3: Uncertain Class 4: Likely pathogenic 0.100 6.221 0.622 0.8485 Thompson et al., 2014, InSiGHT - DNA SEQ PMS2_00002