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LOVD - Variant listings for MSH2

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Patient data (#0000185)
Disease -
Reference -
Remarks -

Variant data
Allele Unknown
Reported pathogenicity Probably no pathogenicity
Concluded pathogenicity Probably no pathogenicity
Exon 11
DNA change c.1730T>C   (View in UCSC Genome Browser)
RNA change r.(?)
Protein p.(Ile577Thr)
MAPP/PP2 Prior P 0.325
Prior P 0.325
IARC Classification Class 2: Likely not pathogenic
InSiGHT Classification Class 2: Likely not pathogenic
Tumour Char LR 0.100
Segregation LR 0.898
Odds for causality 0.090
Posterior P 0.0414
Reference Thompson et al., 2014, InSiGHT
Variant remarks -
Template DNA
Technique SEQ

1 entry in MSH2

Path.
Allele Descending
Ascending
Exon Descending
Ascending
DNA change Descending
Ascending
RNA change Descending
Ascending
Protein Descending
Ascending
MAPP/PP2 Prior P Descending
Ascending
Prior P Descending
Ascending
IARC Classification Descending
Ascending
InSiGHT Classification Descending
Ascending
Tumour Char LR Descending
Ascending
Segregation LR Descending
Ascending
Odds for causality Descending
Ascending
Posterior P Descending
Ascending
Reference Descending
Ascending
Variant remarks Descending
Ascending
Template Descending
Ascending
Technique Descending
Ascending
-?/-? Unknown 11 c.1730T>C r.(?) p.(Ile577Thr) 0.325 0.325 Class 2: Likely not pathogenic Class 2: Likely not pathogenic 0.100 0.898 0.090 0.0414 Thompson et al., 2014, InSiGHT - DNA SEQ